PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G29920.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 499aa    MW: 54357.5 Da    PI: 6.2732
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G29920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.9e-174390148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lvd+vk++G g+W+++ +  g+ R++k+c++rw ++l
  LPERR01G29920.1 43 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 90
                     79******************************************9986 PP

2Myb_DNA-binding21.65e-0796124130
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                      +g++T+eE+ l+++++ ++G++ W++ a++
  LPERR01G29920.1  96 KGAFTAEEERLIIQLHSKMGNK-WARMAAH 124
                      799*******************.**99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.7153894IPR017930Myb domain
SuperFamilySSF466893.6E-2540159IPR009057Homeodomain-like
SMARTSM007172.1E-144292IPR001005SANT/Myb domain
PfamPF002499.6E-154390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-234497IPR009057Homeodomain-like
CDDcd001672.22E-114590No hitNo description
PROSITE profilePS5129411.18795167IPR017930Myb domain
SMARTSM007177.1E-1095165IPR001005SANT/Myb domain
PfamPF002495.7E-696124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2298165IPR009057Homeodomain-like
CDDcd001675.01E-898161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MYRVKSESDC EMIHQDQMDS PAGDDGGGGS GSPQRGGGPP LKKGPWTSAE DAILVDYVKK  60
HGEGNWNAVQ KNTGLFRCGK SCRLRWANHL RPNLKKGAFT AEEERLIIQL HSKMGNKWAR  120
MAAHTWSYGT IGLSVLHDSK PHKIHKLPGR TDNEIKNYWN TRIKRCQRAG LPIYPTTVCN  180
QSSNEDQQGS SDFDCSENLS NGLLNANGLY LPDFTCDNII ANSEALSYPP HLSAESISNL  240
LGQSFASKNC SFMDQVNQTG MLKQSDDVLP GLSHTINGML SSVDQFSNDS EKLKQAVGFD  300
YLHEANSSSK IIAPFGGALN GSHAFLNGNF SASRPTSGPL KMELPSLQDT ESDPNSWLKY  360
TVAPALQPTE LVDPYLQSPT ATPSVKSECA SPRNSGLLEE LIHEAQALRS GKNQQTSVRS  420
SSSSVGTPCN TTVVSSEFDI CQEYWEEQHP GPFLNDSAPF SGNSFTESTP PVSATSPDIF  480
QLSKVSPGWS LKFFALPSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27371651106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032470.0AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBankAP0035700.0AP003570.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0432B10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622335.10.0PREDICTED: transcription factor GAMYB
RefseqXP_015622336.10.0PREDICTED: transcription factor GAMYB
SwissprotA2WW870.0GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A0D9V6Z80.0A0A0D9V6Z8_9ORYZ; Uncharacterized protein
STRINGBGIOSGA004670-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-76myb domain protein 33